CellDetection
Introduction
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Examples
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cd.ops
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cd.callbacks
CellDetection
Index
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Index
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
A
add() (ReplayCache method)
(Schedule method)
add_to_loss_dict() (in module celldetection.util.util)
AdditiveNoise2d (class in celldetection.models.commons)
AdditiveNoise3d (class in celldetection.models.commons)
all_filter() (in module celldetection.mpi.mpi)
ap (LabelMatcher property)
append_hash_to_filename() (in module celldetection.util.util)
args() (Config method)
asnumpy() (in module celldetection.util.util)
avg_ap (LabelMatcherList property)
avg_f1 (LabelMatcherList property)
avg_precision (LabelMatcherList property)
avg_recall (LabelMatcherList property)
B
BackboneAsUNet (class in celldetection.models.unet)
base64_to_image() (in module celldetection.util.util)
batched_box_nms() (in module celldetection.ops.cpn)
batched_box_nmsi() (in module celldetection.ops.cpn)
BBBC039Test (class in celldetection.data.datasets.bbbc039)
BBBC039Train (class in celldetection.data.datasets.bbbc039)
BBBC039Val (class in celldetection.data.datasets.bbbc039)
BBBC041Test (class in celldetection.data.datasets.bbbc041)
BBBC041Train (class in celldetection.data.datasets.bbbc041)
bias (BoxFilter2d attribute)
(Filter2d attribute)
(GaussianFilter2d attribute)
(LaplaceFilter2d attribute)
(PascalFilter2d attribute)
(ScharrFilter2d attribute)
(SobelFilter2d attribute)
BottleneckBlock (class in celldetection.models.commons)
boxes2masks() (in module celldetection.data.segmentation)
BoxFilter2d (class in celldetection.models.filters)
BoxNpllLoss (class in celldetection.models.loss)
Bytes (class in celldetection.util.util)
C
celldetection
module
celldetection.callbacks.dropout
module
celldetection.data
module
celldetection.data.cpn
module
celldetection.data.datasets
module
celldetection.data.datasets.bbbc039
module
celldetection.data.datasets.bbbc041
module
celldetection.data.datasets.synth
module
celldetection.data.instance_eval
module
celldetection.data.misc
module
celldetection.data.segmentation
module
celldetection.data.toydata
module
celldetection.models
module
celldetection.models.commons
module
celldetection.models.convnext
module
celldetection.models.cpn
module
celldetection.models.filters
module
celldetection.models.fpn
module
celldetection.models.loss
module
celldetection.models.manet
module
celldetection.models.mobilenetv3
module
celldetection.models.normalization
module
celldetection.models.resnet
module
celldetection.models.smp
module
celldetection.models.timmodels
module
celldetection.models.unet
module
celldetection.mpi
module
celldetection.mpi.mpi
module
celldetection.ops
module
celldetection.ops.boxes
module
celldetection.ops.commons
module
celldetection.ops.cpn
module
celldetection.ops.draw
module
celldetection.ops.loss
module
celldetection.ops.normalization
module
celldetection.optim.lr_scheduler
module
celldetection.util.schedule
module
celldetection.util.timer
module
celldetection.util.util
module
celldetection.visualization.cmaps
module
celldetection.visualization.images
module
channels_first2channels_last() (in module celldetection.data.misc)
channels_last2channels_first() (in module celldetection.data.misc)
clip_contour_() (in module celldetection.data.cpn)
compute_loss() (CPN method)
conf2augmentation() (in module celldetection.util.schedule)
conf2call() (in module celldetection.util.schedule)
conf2optimizer() (in module celldetection.util.schedule)
conf2scheduler() (in module celldetection.util.schedule)
conf2tweaks_() (in module celldetection.util.schedule)
Config (class in celldetection.util.schedule)
configs (Schedule property)
contours (CPNTargetGenerator property)
contours2boxes() (in module celldetection.data.cpn)
(in module celldetection.ops.boxes)
contours2labels() (in module celldetection.data.cpn)
contours2properties() (in module celldetection.data.cpn)
ConvNeXt (class in celldetection.models.convnext)
ConvNeXtBase (class in celldetection.models.convnext)
ConvNeXtBaseFPN (class in celldetection.models.fpn)
ConvNeXtBaseUNet (class in celldetection.models.unet)
ConvNeXtLarge (class in celldetection.models.convnext)
ConvNeXtLargeFPN (class in celldetection.models.fpn)
ConvNeXtLargeUNet (class in celldetection.models.unet)
ConvNeXtSmall (class in celldetection.models.convnext)
ConvNeXtSmallFPN (class in celldetection.models.fpn)
ConvNeXtSmallUNet (class in celldetection.models.unet)
ConvNeXtTiny (class in celldetection.models.convnext)
ConvNeXtTinyFPN (class in celldetection.models.fpn)
ConvNeXtTinyUNet (class in celldetection.models.unet)
ConvNorm (class in celldetection.models.commons)
ConvNormRelu (class in celldetection.models.commons)
copy_script() (in module celldetection.util.util)
count_submodules() (in module celldetection.util.util)
CPN (class in celldetection.models.cpn)
CpnConvNeXtBaseUNet (class in celldetection.models.cpn)
CpnConvNeXtLargeUNet (class in celldetection.models.cpn)
CpnConvNeXtSmallUNet (class in celldetection.models.cpn)
CpnConvNeXtTinyUNet (class in celldetection.models.cpn)
CpnMiTB5MaNet (class in celldetection.models.cpn)
CpnMobileNetV3LargeFPN (class in celldetection.models.cpn)
CpnMobileNetV3SmallFPN (class in celldetection.models.cpn)
CpnResNet101FPN (class in celldetection.models.cpn)
CpnResNet101UNet (class in celldetection.models.cpn)
CpnResNet152FPN (class in celldetection.models.cpn)
CpnResNet152UNet (class in celldetection.models.cpn)
CpnResNet18FPN (class in celldetection.models.cpn)
CpnResNet18UNet (class in celldetection.models.cpn)
CpnResNet34FPN (class in celldetection.models.cpn)
CpnResNet34UNet (class in celldetection.models.cpn)
CpnResNet50FPN (class in celldetection.models.cpn)
CpnResNet50UNet (class in celldetection.models.cpn)
CpnResNeXt101FPN (class in celldetection.models.cpn)
CpnResNeXt101UNet (class in celldetection.models.cpn)
CpnResNeXt152FPN (class in celldetection.models.cpn)
CpnResNeXt152UNet (class in celldetection.models.cpn)
CpnResNeXt50FPN (class in celldetection.models.cpn)
CpnResNeXt50UNet (class in celldetection.models.cpn)
CpnResUNet (class in celldetection.models.cpn)
CpnSlimU22 (class in celldetection.models.cpn)
CpnSmpMaNet (class in celldetection.models.cpn)
CpnSmpUNet (class in celldetection.models.cpn)
CPNTargetGenerator (class in celldetection.data.cpn)
CpnTimmMaNet (class in celldetection.models.cpn)
CpnTimmUNet (class in celldetection.models.cpn)
CpnU22 (class in celldetection.models.cpn)
CpnWideResNet101FPN (class in celldetection.models.cpn)
CpnWideResNet50FPN (class in celldetection.models.cpn)
CpnWideU22 (class in celldetection.models.cpn)
D
Dict (class in celldetection.util.util)
dict() (GpuStats method)
dict2model() (in module celldetection.util.util)
dict_hash() (in module celldetection.util.util)
dilation (BoxFilter2d attribute)
(Filter2d attribute)
(GaussianFilter2d attribute)
(LaplaceFilter2d attribute)
(PascalFilter2d attribute)
(ScharrFilter2d attribute)
(SobelFilter2d attribute)
download_bbbc039() (in module celldetection.data.datasets.bbbc039)
download_bbbc041() (in module celldetection.data.datasets.bbbc041)
download_synth() (in module celldetection.data.datasets.synth)
downsample_labels() (in module celldetection.ops.commons)
draw_contours_() (in module celldetection.ops.draw)
E
EdgeFilter2d (class in celldetection.models.filters)
elementwise_affine (LayerNorm1d attribute)
(LayerNorm2d attribute)
(LayerNorm3d attribute)
ensure_num_tuple() (in module celldetection.util.util)
ensure_tensor() (in module celldetection.data.misc)
eps (LayerNorm1d attribute)
(LayerNorm2d attribute)
(LayerNorm3d attribute)
exponential_moving_average_() (in module celldetection.util.util)
extra_repr() (Config method)
(IoULoss method)
(MinibatchStdLayer method)
(Normalize method)
ExtraUNetBlock (class in celldetection.models.unet)
F
f1 (LabelMatcher property)
(LabelMatcherList property)
false_negative_labels (LabelMatcher property)
false_negatives (LabelMatcher property)
false_positive_labels (LabelMatcher property)
false_positives (LabelMatcher property)
feed() (CPNTargetGenerator method)
fetch_image() (in module celldetection.util.util)
fetch_model() (in module celldetection.util.util)
fill_label_gaps_() (in module celldetection.data.segmentation)
fill_padding_() (in module celldetection.data.segmentation)
Filter2d (class in celldetection.models.filters)
filter_and_threshold() (LabelMatcher method)
filter_by_box_voting() (in module celldetection.ops.boxes)
filter_contours_by_intensity() (in module celldetection.data.cpn)
filter_contours_by_stitching_rule() (in module celldetection.ops.cpn)
filter_instances_() (in module celldetection.data.segmentation)
forward() (BackboneAsUNet method)
(BoxNpllLoss method)
(CPN method)
(EdgeFilter2d method)
(ExtraUNetBlock method)
(Filter2d method)
(GeneralizedUNet method)
(IntermediateUNetBlock method)
(IoULoss method)
(MinibatchStdLayer method)
(MultiscaleFusionAttention method)
(NoAmp method)
(Normalize method)
(PixelNorm method)
(PositionWiseAttention method)
(ReadOut method)
(SigmoidFocalLoss method)
(SmpEncoder method)
(SpatialSplit method)
(SqueezeExcitation method)
(TimmEncoder method)
(UpFilter2d method)
fourier (CPNTargetGenerator property)
fouriers2contours() (in module celldetection.ops.cpn)
FPN (class in celldetection.models.fpn)
freeze_() (in module celldetection.util.util)
freeze_submodules_() (in module celldetection.util.util)
from_h5() (in module celldetection.util.util)
from_json() (Config static method)
(in module celldetection.util.util)
(Schedule static method)
frozen_params() (in module celldetection.util.util)
Fuse1d (class in celldetection.models.commons)
Fuse2d (class in celldetection.models.commons)
Fuse3d (class in celldetection.models.commons)
G
gaussian_kernel() (in module celldetection.util.util)
GaussianFilter2d (class in celldetection.models.filters)
GeneralizedUNet (class in celldetection.models.unet)
get_axes() (in module celldetection.visualization.images)
get_comm() (in module celldetection.mpi.mpi)
get_device() (in module celldetection.util.util)
get_hosts() (in module celldetection.mpi.mpi)
get_kernel1d() (PascalFilter2d static method)
get_kernel2d() (BoxFilter2d static method)
(GaussianFilter2d static method)
(LaplaceFilter2d static method)
(PascalFilter2d static method)
(ScharrFilter2d static method)
(SobelFilter2d static method)
get_local_comm() (in module celldetection.mpi.mpi)
get_lr() (WarmUp method)
get_multiples() (Schedule method)
get_nd_batchnorm() (in module celldetection.util.util)
get_nd_conv() (in module celldetection.util.util)
get_nd_dropout() (in module celldetection.util.util)
get_nd_linear() (in module celldetection.util.util)
get_nd_max_pool() (in module celldetection.util.util)
get_nn() (in module celldetection.util.util)
get_pos_labels() (in module celldetection.data.instance_eval)
get_rate() (StepDropout static method)
get_resnet() (in module celldetection.models.resnet)
get_scale() (in module celldetection.ops.cpn)
get_tiling_slices() (in module celldetection.util.util)
get_warmup_factor() (in module celldetection.util.util)
GpuStats (class in celldetection.util.util)
groups (BoxFilter2d attribute)
(Filter2d attribute)
(GaussianFilter2d attribute)
(LaplaceFilter2d attribute)
(PascalFilter2d attribute)
(ScharrFilter2d attribute)
(SobelFilter2d attribute)
H
hash() (Config method)
hash_file() (in module celldetection.util.util)
I
image_to_base64() (in module celldetection.util.util)
imshow() (in module celldetection.visualization.images)
imshow_col() (in module celldetection.visualization.images)
imshow_grid() (in module celldetection.visualization.images)
imshow_row() (in module celldetection.visualization.images)
in_channels (BoxFilter2d attribute)
(Filter2d attribute)
(GaussianFilter2d attribute)
(LaplaceFilter2d attribute)
(PascalFilter2d attribute)
(ScharrFilter2d attribute)
(SobelFilter2d attribute)
inject_extra_repr_() (in module celldetection.util.util)
IntermediateUNetBlock (class in celldetection.models.unet)
interpolate_vector() (in module celldetection.ops.commons)
intersection_mask() (in module celldetection.data.instance_eval)
iou_loss() (in module celldetection.ops.loss)
iou_thresh (LabelMatcher property)
(LabelMatcherList property)
IoULoss (class in celldetection.models.loss)
is_empty() (ReplayCache method)
iter_submodules() (in module celldetection.util.util)
K
kernel_size (BoxFilter2d attribute)
(Filter2d attribute)
(GaussianFilter2d attribute)
(LaplaceFilter2d attribute)
(PascalFilter2d attribute)
(ScharrFilter2d attribute)
(SobelFilter2d attribute)
kwargs() (Config method)
L
label_cmap() (in module celldetection.visualization.cmaps)
LabelMatcher (class in celldetection.data.instance_eval)
LabelMatcherList (class in celldetection.data.instance_eval)
labels2counts() (in module celldetection.data.instance_eval)
labels2crops() (in module celldetection.data.misc)
labels2properties() (in module celldetection.data.misc)
labels2property_table() (in module celldetection.data.misc)
labels_exist() (in module celldetection.data.instance_eval)
LaplaceFilter2d (class in celldetection.models.filters)
LayerNorm1d (class in celldetection.models.commons)
LayerNorm2d (class in celldetection.models.commons)
LayerNorm3d (class in celldetection.models.commons)
load() (Config method)
(Schedule method)
load_image() (in module celldetection.util.util)
load_model() (in module celldetection.util.util)
locations (CPNTargetGenerator property)
log_margin_loss() (in module celldetection.ops.loss)
lookup_nn() (in module celldetection.util.util)
M
MaNet (class in celldetection.models.manet)
margin_loss() (in module celldetection.ops.loss)
masks2labels() (in module celldetection.data.cpn)
matching_labels() (in module celldetection.data.instance_eval)
minibatch_std_layer() (in module celldetection.ops.commons)
MinibatchStdLayer (class in celldetection.models.commons)
MobileNetV3Large (class in celldetection.models.mobilenetv3)
MobileNetV3LargeFPN (class in celldetection.models.fpn)
MobileNetV3LargeUNet (class in celldetection.models.unet)
MobileNetV3Small (class in celldetection.models.mobilenetv3)
MobileNetV3SmallFPN (class in celldetection.models.fpn)
MobileNetV3SmallUNet (class in celldetection.models.unet)
model2dict() (in module celldetection.util.util)
module
celldetection
celldetection.callbacks.dropout
celldetection.data
celldetection.data.cpn
celldetection.data.datasets
celldetection.data.datasets.bbbc039
celldetection.data.datasets.bbbc041
celldetection.data.datasets.synth
celldetection.data.instance_eval
celldetection.data.misc
celldetection.data.segmentation
celldetection.data.toydata
celldetection.models
celldetection.models.commons
celldetection.models.convnext
celldetection.models.cpn
celldetection.models.filters
celldetection.models.fpn
celldetection.models.loss
celldetection.models.manet
celldetection.models.mobilenetv3
celldetection.models.normalization
celldetection.models.resnet
celldetection.models.smp
celldetection.models.timmodels
celldetection.models.unet
celldetection.mpi
celldetection.mpi.mpi
celldetection.ops
celldetection.ops.boxes
celldetection.ops.commons
celldetection.ops.cpn
celldetection.ops.draw
celldetection.ops.loss
celldetection.ops.normalization
celldetection.optim.lr_scheduler
celldetection.util.schedule
celldetection.util.timer
celldetection.util.util
celldetection.visualization.cmaps
celldetection.visualization.images
MultiscaleFusionAttention (class in celldetection.models.manet)
N
nms() (in module celldetection.ops.boxes)
NoAmp (class in celldetection.models.commons)
Normalize (class in celldetection.models.commons)
normalize_percentile() (in module celldetection.data.misc)
normalized_shape (LayerNorm1d attribute)
(LayerNorm2d attribute)
(LayerNorm3d attribute)
NormProxy (class in celldetection.util.util)
num_bytes() (in module celldetection.util.util)
num_params() (in module celldetection.util.util)
O
on_train_batch_start() (StepDropout method)
on_train_epoch_start() (StepDropout method)
order_weighting() (in module celldetection.ops.cpn)
out_channels (BoxFilter2d attribute)
(Filter2d attribute)
(GaussianFilter2d attribute)
(LaplaceFilter2d attribute)
(PascalFilter2d attribute)
(ScharrFilter2d attribute)
(SobelFilter2d attribute)
output_padding (BoxFilter2d attribute)
(Filter2d attribute)
(GaussianFilter2d attribute)
(LaplaceFilter2d attribute)
(PascalFilter2d attribute)
(ScharrFilter2d attribute)
(SobelFilter2d attribute)
P
pad_to_div() (in module celldetection.data.misc)
(in module celldetection.ops.commons)
pad_to_size() (in module celldetection.data.misc)
(in module celldetection.ops.commons)
padded_stack2d() (in module celldetection.ops.commons)
padding (BoxFilter2d attribute)
(Filter2d attribute)
(GaussianFilter2d attribute)
(LaplaceFilter2d attribute)
(PascalFilter2d attribute)
(ScharrFilter2d attribute)
(SobelFilter2d attribute)
padding_mode (BoxFilter2d attribute)
(Filter2d attribute)
(GaussianFilter2d attribute)
(LaplaceFilter2d attribute)
(PascalFilter2d attribute)
(ScharrFilter2d attribute)
(SobelFilter2d attribute)
padding_stack() (in module celldetection.data.misc)
pairwise_box_iou() (in module celldetection.ops.boxes)
pairwise_generalized_box_iou() (in module celldetection.ops.boxes)
PascalFilter2d (class in celldetection.models.filters)
Percent (class in celldetection.util.util)
pixel_norm() (in module celldetection.ops.normalization)
PixelNorm (class in celldetection.models.normalization)
plot_box() (in module celldetection.visualization.images)
plot_boxes() (in module celldetection.visualization.images)
plot_contours() (in module celldetection.visualization.images)
plot_mask() (in module celldetection.visualization.images)
plot_score() (in module celldetection.visualization.images)
plot_text() (in module celldetection.visualization.images)
PositionWiseAttention (class in celldetection.models.manet)
precision (LabelMatcher property)
print_timing() (in module celldetection.util.timer)
print_to_file() (in module celldetection.util.util)
product (Schedule property)
Q
query() (in module celldetection.mpi.mpi)
quiver_plot() (in module celldetection.visualization.images)
R
r1_regularization() (in module celldetection.ops.loss)
random_circle() (in module celldetection.data.toydata)
random_code_name() (in module celldetection.util.util)
random_code_name_dir() (in module celldetection.util.util)
random_colors_hsv() (in module celldetection.visualization.cmaps)
random_crop() (in module celldetection.data.misc)
random_ellipse() (in module celldetection.data.toydata)
random_geometric_objects() (in module celldetection.data.toydata)
random_rectangle() (in module celldetection.data.toydata)
random_seed() (in module celldetection.util.util)
random_triangle() (in module celldetection.data.toydata)
ReadOut (class in celldetection.models.commons)
recall (LabelMatcher property)
recv() (in module celldetection.mpi.mpi)
reduce_loss() (in module celldetection.ops.loss)
reduce_loss_dict() (in module celldetection.util.util)
reduced_labels (CPNTargetGenerator property)
reduction (BoxNpllLoss attribute)
(IoULoss attribute)
(SigmoidFocalLoss attribute)
refinement_bucket_weight() (in module celldetection.ops.cpn)
rel_location2abs_location() (in module celldetection.ops.cpn)
relabel_() (in module celldetection.data.segmentation)
remove_border_contours() (in module celldetection.ops.cpn)
remove_padding() (in module celldetection.data.segmentation)
remove_partials_() (in module celldetection.data.segmentation)
render_contour() (in module celldetection.data.cpn)
replace_module_() (in module celldetection.util.util)
ReplayCache (class in celldetection.models.commons)
resample_contours() (in module celldetection.data.misc)
ResBlock (class in celldetection.models.commons)
reset_parameters() (Filter2d method)
ResNet101 (class in celldetection.models.resnet)
ResNet101FPN (class in celldetection.models.fpn)
ResNet101UNet (class in celldetection.models.unet)
ResNet152 (class in celldetection.models.resnet)
ResNet152FPN (class in celldetection.models.fpn)
ResNet152UNet (class in celldetection.models.unet)
ResNet18 (class in celldetection.models.resnet)
ResNet18FPN (class in celldetection.models.fpn)
ResNet18UNet (class in celldetection.models.unet)
ResNet34 (class in celldetection.models.resnet)
ResNet34FPN (class in celldetection.models.fpn)
ResNet34UNet (class in celldetection.models.unet)
ResNet50 (class in celldetection.models.resnet)
ResNet50FPN (class in celldetection.models.fpn)
ResNet50UNet (class in celldetection.models.unet)
ResNeXt101_32x8d (class in celldetection.models.resnet)
ResNeXt101FPN (class in celldetection.models.fpn)
ResNeXt101UNet (class in celldetection.models.unet)
ResNeXt152_32x8d (class in celldetection.models.resnet)
ResNeXt152FPN (class in celldetection.models.fpn)
ResNeXt152UNet (class in celldetection.models.unet)
ResNeXt50_32x4d (class in celldetection.models.resnet)
ResNeXt50FPN (class in celldetection.models.fpn)
ResNeXt50UNet (class in celldetection.models.unet)
resolve_label_channels() (in module celldetection.data.cpn)
resolve_refinement_buckets() (in module celldetection.ops.cpn)
ResUNet (class in celldetection.models.unet)
rgb_to_scalar() (in module celldetection.data.misc)
rle2mask() (in module celldetection.data.misc)
S
sampled_contours (CPNTargetGenerator property)
sampled_sizes (CPNTargetGenerator property)
sampling (CPNTargetGenerator property)
save_fetchable_model() (in module celldetection.util.util)
save_fig() (in module celldetection.visualization.images)
scale_contours() (in module celldetection.ops.cpn)
scale_fourier() (in module celldetection.ops.cpn)
ScaledSigmoid (class in celldetection.models.commons)
ScaledTanh (class in celldetection.models.commons)
ScharrFilter2d (class in celldetection.models.filters)
Schedule (class in celldetection.util.schedule)
send() (in module celldetection.mpi.mpi)
serve() (in module celldetection.mpi.mpi)
show_detection() (in module celldetection.visualization.images)
SigmoidFocalLoss (class in celldetection.models.loss)
sink() (in module celldetection.mpi.mpi)
SlimU22 (class in celldetection.models.unet)
SmpEncoder (class in celldetection.models.smp)
SmpFPN (class in celldetection.models.fpn)
SmpMaNet (class in celldetection.models.manet)
SmpUNet (class in celldetection.models.unet)
SobelFilter2d (class in celldetection.models.filters)
SpatialSplit (class in celldetection.models.commons)
spectral_norm_() (in module celldetection.util.util)
split_spatially() (in module celldetection.ops.commons)
SqueezeExcitation (class in celldetection.models.commons)
stack_labels() (in module celldetection.data.segmentation)
start_timer() (in module celldetection.util.timer)
StepDropout (class in celldetection.callbacks.dropout)
stop_timer() (in module celldetection.util.timer)
stride (BoxFilter2d attribute)
(Filter2d attribute)
(GaussianFilter2d attribute)
(LaplaceFilter2d attribute)
(PascalFilter2d attribute)
(ScharrFilter2d attribute)
(SobelFilter2d attribute)
Stride1d (class in celldetection.models.commons)
Stride2d (class in celldetection.models.commons)
Stride3d (class in celldetection.models.commons)
strided_upsampling2d() (in module celldetection.ops.commons)
SynthTest (class in celldetection.data.datasets.synth)
SynthTrain (class in celldetection.data.datasets.synth)
SynthVal (class in celldetection.data.datasets.synth)
T
tensor_to() (in module celldetection.util.util)
Tiling (class in celldetection.util.util)
TimmEncoder (class in celldetection.models.timmodels)
TimmFPN (class in celldetection.models.fpn)
TimmMaNet (class in celldetection.models.manet)
TimmUNet (class in celldetection.models.unet)
to_device() (in module celldetection.util.util)
to_dict() (Config method)
(Schedule method)
to_dict_list() (Schedule method)
to_h5() (in module celldetection.util.util)
to_json() (Config method)
(in module celldetection.util.util)
(Schedule method)
to_tensor() (in module celldetection.data.misc)
to_tiff() (in module celldetection.util.util)
to_txt() (Config method)
train_epoch() (in module celldetection.util.util)
trainable_params() (in module celldetection.util.util)
training (AdditiveNoise2d attribute)
(AdditiveNoise3d attribute)
(BackboneAsUNet attribute)
(BottleneckBlock attribute)
(ConvNeXtBaseFPN attribute)
(ConvNeXtBaseUNet attribute)
(ConvNeXtLargeFPN attribute)
(ConvNeXtLargeUNet attribute)
(ConvNeXtSmallFPN attribute)
(ConvNeXtSmallUNet attribute)
(ConvNeXtTinyFPN attribute)
(ConvNeXtTinyUNet attribute)
(CPN attribute)
(CpnConvNeXtBaseUNet attribute)
(CpnConvNeXtLargeUNet attribute)
(CpnConvNeXtSmallUNet attribute)
(CpnConvNeXtTinyUNet attribute)
(CpnMiTB5MaNet attribute)
(CpnMobileNetV3LargeFPN attribute)
(CpnMobileNetV3SmallFPN attribute)
(CpnResNet101FPN attribute)
(CpnResNet101UNet attribute)
(CpnResNet152FPN attribute)
(CpnResNet152UNet attribute)
(CpnResNet18FPN attribute)
(CpnResNet18UNet attribute)
(CpnResNet34FPN attribute)
(CpnResNet34UNet attribute)
(CpnResNet50FPN attribute)
(CpnResNet50UNet attribute)
(CpnResNeXt101FPN attribute)
(CpnResNeXt101UNet attribute)
(CpnResNeXt152FPN attribute)
(CpnResNeXt152UNet attribute)
(CpnResNeXt50FPN attribute)
(CpnResNeXt50UNet attribute)
(CpnResUNet attribute)
(CpnSlimU22 attribute)
(CpnSmpMaNet attribute)
(CpnSmpUNet attribute)
(CpnTimmMaNet attribute)
(CpnTimmUNet attribute)
(CpnU22 attribute)
(CpnWideResNet101FPN attribute)
(CpnWideResNet50FPN attribute)
(CpnWideU22 attribute)
(EdgeFilter2d attribute)
(ExtraUNetBlock attribute)
(FPN attribute)
(Fuse1d attribute)
(Fuse2d attribute)
(Fuse3d attribute)
(GaussianFilter2d attribute)
(GeneralizedUNet attribute)
(IntermediateUNetBlock attribute)
(LaplaceFilter2d attribute)
(MaNet attribute)
(MinibatchStdLayer attribute)
(MobileNetV3LargeFPN attribute)
(MobileNetV3LargeUNet attribute)
(MobileNetV3SmallFPN attribute)
(MobileNetV3SmallUNet attribute)
(MultiscaleFusionAttention attribute)
(NoAmp attribute)
(Normalize attribute)
(PascalFilter2d attribute)
(PixelNorm attribute)
(PositionWiseAttention attribute)
(ReadOut attribute)
(ResBlock attribute)
(ResNet101FPN attribute)
(ResNet101UNet attribute)
(ResNet152FPN attribute)
(ResNet152UNet attribute)
(ResNet18FPN attribute)
(ResNet18UNet attribute)
(ResNet34FPN attribute)
(ResNet34UNet attribute)
(ResNet50FPN attribute)
(ResNet50UNet attribute)
(ResNeXt101FPN attribute)
(ResNeXt101UNet attribute)
(ResNeXt152FPN attribute)
(ResNeXt152UNet attribute)
(ResNeXt50FPN attribute)
(ResNeXt50UNet attribute)
(ResUNet attribute)
(ScaledSigmoid attribute)
(ScaledTanh attribute)
(ScharrFilter2d attribute)
(SlimU22 attribute)
(SmpEncoder attribute)
(SmpFPN attribute)
(SmpMaNet attribute)
(SmpUNet attribute)
(SobelFilter2d attribute)
(SpatialSplit attribute)
(Stride1d attribute)
(Stride2d attribute)
(Stride3d attribute)
(TimmEncoder attribute)
(TimmFPN attribute)
(TimmMaNet attribute)
(TimmUNet attribute)
(U12 attribute)
(U17 attribute)
(U22 attribute)
(UNet attribute)
(UpFilter2d attribute)
(WideResNet101FPN attribute)
(WideResNet101UNet attribute)
(WideResNet50FPN attribute)
(WideResNet50UNet attribute)
(WideU22 attribute)
transpose_spatial() (in module celldetection.data.misc)
transposed (BoxFilter2d attribute)
(Filter2d attribute)
(GaussianFilter2d attribute)
(LaplaceFilter2d attribute)
(PascalFilter2d attribute)
(ScharrFilter2d attribute)
(SobelFilter2d attribute)
true_positive_labels (LabelMatcher property)
true_positives (LabelMatcher property)
tweak_module_() (in module celldetection.util.util)
TwoConvNormLeaky (class in celldetection.models.commons)
TwoConvNormRelu (class in celldetection.models.commons)
U
U12 (class in celldetection.models.unet)
U17 (class in celldetection.models.unet)
U22 (class in celldetection.models.unet)
unary_masks2labels() (in module celldetection.data.segmentation)
UNet (class in celldetection.models.unet)
UNetEncoder (class in celldetection.models.unet)
unfreeze_() (in module celldetection.util.util)
unfreeze_submodules_() (in module celldetection.util.util)
UNITS (Bytes attribute)
universal_dict_collate_fn() (in module celldetection.data.misc)
update() (LabelMatcher method)
update_dict_() (in module celldetection.util.util)
update_drop_rate() (StepDropout method)
UpFilter2d (class in celldetection.models.filters)
V
vec2matches() (in module celldetection.data.instance_eval)
W
WarmUp (class in celldetection.optim.lr_scheduler)
weight (BoxFilter2d attribute)
(Filter2d attribute)
(GaussianFilter2d attribute)
(LaplaceFilter2d attribute)
(PascalFilter2d attribute)
(ScharrFilter2d attribute)
(SobelFilter2d attribute)
weight_norm_() (in module celldetection.util.util)
WideResNet101_2 (class in celldetection.models.resnet)
WideResNet101FPN (class in celldetection.models.fpn)
WideResNet101UNet (class in celldetection.models.unet)
WideResNet50_2 (class in celldetection.models.resnet)
WideResNet50FPN (class in celldetection.models.fpn)
WideResNet50UNet (class in celldetection.models.unet)
WideU22 (class in celldetection.models.unet)
wrap_module_() (in module celldetection.util.util)
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